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The compressors do spin the same direction. Other than making sure your pulleys match up, there really isn't a reason you can't use the older compressor. Line fitment may be a minor issue, but nothing that can't be overcome.
Seems easier to keep the 5.4 compressor and adapt lines to work. brackets for that and the comp is just gonna take more space and its limited. could prob swap over most 99+ ac parts and do very little fab work